References:
Andersen M. J., Hosner P. A., Filardi C. E., Moyle R. G. 2015. Phylogeny of the monarch flycatchers reveals extensive paraphyly and novel relationships within a major Australo-Pacific radiation. Mol Phylogenet Evol, 83: 118–136
Bao X. K., Liu N. F., Qu J. Y., Wang X. L., An B., Wen L. Y., Song S. 2010. The phylogenetic position and speciation dynamics of the genus Perdix (Phasianidae, Galliformes). Mol Phylogenet Evol, 56: 840–847
Cai Y., Yan J., Xu X. F., Lin Z. H., Ji X. 2012. Mitochondrial DNA phylogeography reveals a west–east division of the northern grass lizard (Takydromus septentrionalis) endemic to China. J Zool Syst Evol Res, 50: 137–144
Corander J., Marttinen P., Siren J., Tang J. 2008. Enhanced Bayesian modelling in BAPS software for learning genetic structures of populations. BMC Bioinformatics, 9: 539
Corander J., Tang J. 2007. Bayesian analysis of population structure based on linked molecular information. Math Biosci, 205: 19–31
Corander J., Waldmann P., Sillanp?? M. J. 2003. Bayesian analysis of genetic differentiation between populations. Genetics, 163: 367–374
Cox S. C., Carranza S., Brown R. P. 2010. Divergence times and colonization of the Canary islands by Gallotia lizards. Mol Phylogenet Evol, 56: 747–757
Drummond A. J., Ho S. Y., Phillips M. J., Rambaut A. 2006. Relaxed phylogenetics and dating with confidence. PLoS Biol, 4: e88
Drummond A. J., Suchard M. A., Xie D., Rambaut A. A. 2012. Bayesian phylogenetics with BEAUti and the BEAST 1.7. Mol Biol Evol, 29: 1969–1973
Everson K. M., Soarimalala V., Goodman S. M., Olson L. E. 2016. Multiple loci and complete taxonomic sampling resolve the phylogeny and biogeographic history of tenrecs (Mammalia: Tenrecidae) and reveal higher speciation rates in Madagascar’s humid forests. Syst Biol, 65: syw034
Fan Z., Liu S., Liu Y., Liao L., Zhang X., Yue B. 2012. Phylogeography of the South China field mouse (Apodemus draco) on the southeastern Tibetan Plateau reveals high genetic diversity and glacial refugia. PLoS One, 7: e38184
Farris J. S., Kallersjo M., Kluge A. G., Bult, C. 1995. Constructing a significance test for incongruence. Syst Biol, 44: 570–572
Frost D. R. 2016. Amphibian Species of the World: an Online Reference. Version 6.0 (28 November, 2016). Electronic Database accessible at http://research.amnh.org/vz/herpetology/amphibia/. New York, USA: American Museum of Natural History
Fu J., Weadick C. J., Zeng X., Wang Y., Liu Z., Zheng Y., Cheng L., Ying H. 2005. Phylogeographic analysis of the Bufo gargarizans species complex: a revisit. Mol Phylogenet Evol, 37: 202–213
Fu Y. X. 1997. Statistical test of neutrality of mutations against population growth, hitchhiking and background selection. Genetics, 147: 915–925
Gama R., Faria A. L. A., Stech M. 2016. Identity and origin of the campylopus (Leucobryaceae, Bryopsida) species from trindade island (Brazil). Cryptogamie Bryol, 37: 241–250
Garcia-Porta J., Litvinchuk S. N., Crochet P. A., Romano A., Geniez P. H., Lo-Valvo M., Lymberakis P., Carranza S. 2012. Molecular phylogenetics and historical biogeography of the west-palearctic common toads (Bufo bufo species complex). Mol Phylogenet Evol, 63: 113–130
Goebel A. M., Donnelly J. M., Atz M. E. 1999. PCR primers and amplification methods for 12S ribosomal DNA, the control region, cytochrome oxidase I, and cytochrome b in Bufonids and other frogs, and an overview of PCR primers which have amplified DNA in amphibians successfully. Mol Phylogenet Evol, 11: 163–199
Heller R., Chikhi L., Siegismund H. R. 2013. The confounding effect of population structure on Bayesian skyline plot inferences of demographic history. PLoS One, 8: e62992
Hu Y. L., Wu X. B., Jiang Z. G., Yan P., Su X., Cao S. Y. 2007. Population genetics and phylogeography of Bufo gargarizans in China. Biochem Genet, 45: 697–711
Igawa T., Kurabayashi A., Nishioka M., Sumida M. 2006. Molecular phylogenetic relationship of toads distributed in the far east and Europe inferred from the nucleotide sequences of mitochondrial DNA genes. Mol Phylogenet Evol, 38: 250–260
James H. F., Ericson P. G. P., Slikas B., Lei F. M., Gill F. B., Olson S. L. 2003. Pseufzdopodoces humilis, a misclassified terrestrial tit (Paridae) of the Tibetan Plateau: evolutionary consequences of shifting adaptive zones. Ibis, 145: 185–202
Li J. B. 2008. Regional geology of the east China sea. Beijing: Ocean Press (In Chinese)
Li Y., Wu Z., Duncan R. P. 2006. Why islands are easier to invade: human influences on bullfrog invasion in the zhoushan archipelago and neighboring mainland China. Oecologia, 148: 129–136
Li Z. J., Yu G. H., Rao D. Q., Yang J. X. 2012. Phylogeography and demographic history of Babina pleuraden (Anura, Ranidae) in southwestern China. PLoS One, 7: e34013
Lin L. H., Zhao Q., Ji X. 2008. Conservation genetics of the Chinese cobra (Naja atra) investigated with mitochondrial DNA sequences. Zool Sci, 25: 888–893
Liu W., Lathrop A., Fu J., Yang D., Murphy R. W. 2000. Phylogeny of east Asian bufonids inferred from mitochondrial DNA sequences (Anura: Amphibia). Mol Phylogenet Evol, 14: 423–435
Lohman D. J., Bruyn M. D., Page T., Rintelen K. V., Hall R., Ng P. K. L., Shih H. T., Carvalho G. R., Rintelen T. V. 2011. Biogeography of the indo-Australian Archipelago. Annu Rev Ecol Evol Syst, 42: 205–226
Luo J., Yang D., Suzuki H., Wang Y., Chen W. J., Campbell K. L., Zhang Y. P. 2004. Molecular phylogeny and biogeography of oriental voles: genus Eothenomys (Muridae, Mammalia). Mol Phylogenet Evol, 33: 349–362
Macey J. R., Ii J. A. S., Larson A., Fang Z., Wang Y., Tuniyev B. S., Papenfuss T. J. 1998. Phylogenetic relationships of toads in the Bufo bufo species group from the eastern escarpment of the Tibetan Plateau: a case of vicariance and dispersal. Mol Phylogenet Evol, 9: 80–87
Pan B. T., Fang X. M., Li J. J., Shi Y. F., Cui Z. J. 1998. Uplift and environmental changes of the Qinghai–Xizang (Tibetan) Plateau during the Late Cenozoic Period. In Shi Y. F., Li J. J., Li B. Y. (Eds.), Uplift and environmental changes of the Qinghai–Xizang (Tibetan) Plateau in the late Cenozoic. Guangzhou: Guangdong Science and Technology Press (In Chinese)
Qian F., Chen F. 1984. Study on the paleomagnetism of the Xigeda formation. J Mt Res, 4: 275–282 (In Chinese with English abstract)
Qu Y., Ericson P. G. P., Lei F., Gebauer A., Kaiser M., Helbig A. J. 2006. Molecular phylogenetic relationship of snow finch complex (genera Montifringilla, Pyrgilauda, and Onychostruthus) from the Tibetan plateau. Mol Phylogenet Evol, 40: 218–226
Recuero E., Canestrelli D., Voros J., Szabo K., Poyarkov N. A., Arntzen J. W., Crnobrnja-Isailovic J., Kidov A. A., Cogalniceanu D., Caputo F. P., Nascetti G., Martinez-Solano I. 2012. Multilocus species tree analyses resolve the radiation of the widespread Bufo bufo species group (Anura, Bufonidae). Mol Phylogenet Evol, 62: 71–86
Renner S. S. 2016. Available data point to a 4–km–high Tibetan Plateau by 40Ma, but 100 molecular–clock papers have linked supposed recent uplift to young node ages. Journal of Biogeography: 1–9 (published online)
Rijsdijk K. F., Hengl T., Norder S. J., Otto R., Emerson B. C., ?vila S. P., López H., Loon E. E. V., Tj?rve E., Fernández-Palacios J. M. 2014. Quantifying surface–area changes of volcanic islands driven by Pleistocene sea–level cycles: biogeographical implications for the Macaronesian archipelagos. J Biogeogr, 41: 1242–1254
Rodríguez V., Brown R. P., Terrasa B., Pérez-Mellado V., Picornell A., Castro J. A., Ramon C. 2013. Genetic diversity and historical biogeography of the Maltese wall lizard, Podarcis filfolensis (Squamata: Lacertidae). Conserv Genet, 15: 295–304
Schoville S. D., Roderick G. K. 2009. Alpine biogeography of parnassian butterflies during Quaternary climate cycles in north America. Mol Ecol, 18: 3471–3485
Shi Y. F., Li J. Y., Li B. Y., Pan B. T., Fang X. M., Yao T. D., Wang S. M., Cui Z. J., Li S. J. 1998. Uplift and environmental evolution of Qinghai–Xizang (Tibetan) Plateau. In Sun H. L., Zheng D. (Eds.), Formation, evolution and development of Qinghai–Xizang (Tibetan) Plateau. Guangdong: Guangdong Science and Technology Press (In Chinese)
Song G., Qu Y., Yin Z., Li S., Liu N., Lei F. 2008. Phylogeography of the Alcippe morrisonia (Aves: Timaliidae): long population history beyond late Pleistocene glaciations. BMC Evol Biol, 9: 1–11
Swofford D. L. 1998. PAUP*: phylogenetic analysis using parsimony, version 4.0. Champaign: Illinois Natural History Survey
Szarowska M., Osikowski A., Hofman S., Falniowski A. 2016. Do diversity patterns of the spring-inhabiting snail Bythinella (Gastropoda, Bythinellidae) on the Aegean Islands reflect geological history? Hydrobiologia, 765: 1–19
Tajima F. 1989. The effect of change in population size on DNA polymorphism. Genetics, 123: 597–601
Wang S. P., Zhu W., Gao X., Li X. P., Yan S. F., Liu X., Yang J., Gao Z. X., Li Y. M. 2014. Population size and time since island isolation determine genetic diversity loss in insular frog populations. Mol Ecol, 23: 637–648
Wei L., Flanders J. R., Rossiter S. J., Miller-Butterworth C. M., Zhang L. B., Zhang S. Y. 2010. Phylogeography of the Japanese pipistrelle bat, Pipistrellus abramus, in China: the impact of ancient and recent events on population genetic structure. Biol J Linn Soc, 99: 582–594
Wei N., Wang Z. S., Leng X., Zheng J. W., An S. Q. 2008. Conservation of oceanic island biodiversity: a review. Chinese J Ecol, 27: 460–468 (In Chinese with English abstract)
Wu Z. J., li Y. M., Brad R. M. 2006. Insular shifts in body size of rice frogs in the Zhoushan Archipelago, China. J Anim Ecol, 75: 1071–1080
Xu F., Adler G. H., Li Y. 2013. Covariation in insular life–history traits of the rice frog (Fejervarya limnocharis) in eastern China. Asian Herpetol Res, 4: 28–35
Yu T. L., Lin H. D., Weng C. F. 2014. A new phylogeographic pattern of endemic Bufo bankorensis in Taiwan island is attributed to the genetic variation of populations. PLoS One, 9: e98029
Zheng D., Yao T. D. 2006. Uplifting of Tibetan Plateau with its environmental effects. Adv Earth Sci, 21: 451–458 (In Chinese with English abstract)